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edit-segment-annotations

This command allows editing segment annotations in annotations.json which is a part of an internal database entry. Requires the following arguments:

Argument Description
--entry_id (string) entry ID in internal database, corresponding to the entry folder name (e.g. emd-1832)
--source_db (string) source database, corresponding to the source database folder name in internal database (e.g. emdb)
--db_path (string) specifies the path to the internal database
--data_json_path (string) specifies path to JSON file with segment annotations. This file represents a list of objects, each of which follow a specific data model (see diagram below, annotations field). An example of such file is provided under the schema. 

[
    {
        "color": [
            0.1,
            0.1,
            0.1,
            1.0
        ],
        "id": "bd89b35f-25c3-4cef-bcb3-1df624b13f4d",
        "segment_id": 85,
        "segment_kind": "lattice",
        "segmentation_id": "0",
        "time": 0
    },
    {
        "color": [
            0.9,
            0.9,
            0.9,
            1.0
        ],
        "id": "b79dfd1e-a00c-4cd7-8d49-305c73c1fd81",
        "segment_id": 93,
        "segment_kind": "lattice",
        "segmentation_id": "0",
        "time": 0
    }
]